Free Open Source Medical Physics Software

Medical Physics Software

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    Iso2Mesh - A 3D Mesh Generation Toolbox Icon

    Iso2Mesh - A 3D Mesh Generation Toolbox

    A 3D surface and volumetric mesh generator for MATLAB/Octave

    A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.

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    MRiLab Icon

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961

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    NiftyRec Icon

    NiftyRec

    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.

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    SMILI Icon

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.

    Downloads: 56 This Week Last Update: See Project
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    plastimatch

    Volumetric image processing software

    Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET).

    Downloads: 33 This Week Last Update: See Project
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    We take standard construction document processes and digitize them for easier access and organization. Items such as quotes and estimates, purchase orders, site diaries, daily reports, change orders, invoices and more are all now easily attached and accessible from one project link.
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    Virtual Collaborative Environment

    This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.

    Downloads: 26 This Week Last Update: See Project
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    ExpSuite Icon

    ExpSuite

    ExpSuite is a software framework for applications to perform psychoacoustical experiments. ExpSuite allows acoustic and electric stimulation for normal hearing and cochlear implant listeners, respectively.

    Downloads: 22 This Week Last Update: See Project
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    KinetDS

    KinetDS is a software for curve fitting particularly designed for kinetic (mechanistic and empirical) description of a substance dissolution from solid state. It was primarily designed for handling pharmaceutical dissolution tests

    Downloads: 12 This Week Last Update: See Project
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    PhysiCell Icon

    PhysiCell

    physics-based multicellular simulator

    PhysiCell is a cross-platform C++ framework for large, physics-based multicellular simulations.

    Downloads: 19 This Week Last Update: See Project
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    The Neurophysiological Biomarker Toolbox Icon

    The Neurophysiological Biomarker Toolbox

    NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.

    Downloads: 14 This Week Last Update: See Project
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    medintux Icon

    medintux

    Gestion de Cabinet Medical / Medical Patient Record

    Since 2 months, new version will arrive in QT5, with better integration of multimedia document and multilanguage support. If you have some specificity in your country, tell us we can integrate it. Medintux est une suite logicielle pour la gestion du cabinet médical et des services hospitaliers. Agrément ROSP, Compatible HAS avec le Vidal ou Thériaque, CIM10, codage CCAM. Liaison Sesam Vitale, Hprim, Apicrypt, Sigems. 100% Paramétrable et personnalisable. Environnement : Fonctionne sous MAC, Linux, PC, Android et mode Web intégré dans un navigateur. Fonctionnalités : Comptabilité, Gestion du dossier patient, Gestion documentaire, Gestion des admissions et des salles d'attentes. Aide à la prescription.... Base de donnée : Gestion client serveur avec Mysql. Supporte des milliers de dossiers sans ralentissement. Une communauté active avec plusieurs centaines d'utilisateurs au quotidien. Medintux est un projet mature utilisable au quotidien

    Downloads: 13 This Week Last Update: See Project
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    gVirtualXRay Icon

    gVirtualXRay

    Virtual X-Ray Imaging Library on GPU

    gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python2, Python3, R, Ruby, Tcl, C#, Java, and GNU Octave.

    Downloads: 6 This Week Last Update: See Project
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    Orthanc Icon

    Orthanc

    Lightweight, RESTful DICOM server for healthcare and medical research

    [2015-06-12] Orthanc has left SourceForge. All the downloads are now available directly from our official Website: http://www.orthanc-server.com/browse.php

    Downloads: 9 This Week Last Update: See Project
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    ismrmrd

    ISMRM Raw Data File Format

    We have moved to GitHub. web: http://gadgetron.github.io code: http://github.com/gadgetron/gadgetron discussion board: https://groups.google.com/forum/#!forum/ismrmrd

    Downloads: 6 This Week Last Update: See Project
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    Spinal Cord Toolbox Icon

    Spinal Cord Toolbox

    Toolbox for processing spinal cord MRI data

    The Spinal Cord Toolbox is a comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord. List of contributors can be found here: https://sourceforge.net/p/spinalcordtoolbox/wiki/Home/

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    Toastpp Icon

    Toastpp

    Forward and inverse modelling in optical tomography

    Toast++ is a C++ software package for modelling light transport in scattering media using the finite element method. It allows 3D reconstruction of absorption and scattering distributions inside an object from boundary measurements of light transmission, using steady state, time domain or frequency domain information. Matlab and Python bindings exist for ease of use and fast prototyping.

    Downloads: 4 This Week Last Update: See Project
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    Nest-o-Patch Icon

    Nest-o-Patch

    Software for analysis of patch-clamp recordings and other wave data

    This program was designed mainly for preconditioning and analysis of electrophysiological data, including patch-clamp and 2-electrode voltage clamp recordings. The program includes tools both for basic analysis of whole-cell recordings or analysis of single channel properties. Program can display and analyse long traces incuding many sweeps, series and even groups simultaneously. Current amplitudes or time intervals are easily measured. Single channel conductance, kinetics, NPo, as well as number of channels in a patch and their open probability may be estimated with the analysis of dwelling time at each conductance level. The program directly reads files, created by Pulse and PatchMaster software (HEKA Elektronik Dr. Schulze GmbH) as well as ASCII files. However, the program may be useful in various applications when editing and measurements in a 2-dimentional (for example time-current) wave are required.

    Downloads: 2 This Week Last Update: See Project
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    Gadgetron Icon

    Gadgetron

    Medical Image Reconstruction Framework

    Medical Image Reconstruction Framework

    Downloads: 1 This Week Last Update: See Project
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    Biomecanica Computacional U-America Icon

    Biomecanica Computacional U-America

    Investigacion de diseño avanzado en biomecanica computacional con elementos finitos usando herramientas de software-libre.

    Downloads: 3 This Week Last Update: See Project
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    PatientKAPRecords Icon

    PatientKAPRecords

    KAP evaluation and patient records in radiodiagnostic

    This program tries to help radiologists to keep track of patients which receive radiation doses (measured, or computed, free in air) from radiodiagnostic examinations. It performs computation of KAP (kerma-area-product if it is not recorded by a dedicated DAP-meter) and record the patient information. The program also generates elegant reports which can be converted as pdf, xls etc. Source code included in jar files. Also, available on GitHub: https://github.com/ZiliasTheSaint/PatientRxRecord.git

    Downloads: 3 This Week Last Update: See Project
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    QualityControlForRadiology Icon

    QualityControlForRadiology

    QC tests and patient doses from radiodiagnostic XRay equipment

    This software performs various quality control tests for XRay devices used in radiography, mammography, fluoroscopy and CT such as: HVL/tube filtration, high voltage, exposure time, tube output, MTF calculations, film sensitometry, AEC devices and more. It also compute patient doses using an external program based on the GEANT4 simulation toolkit. This program is found here: https://sourceforge.net/projects/doseinhumanbody/ Read the "README" file for details. Source code and documentation included. Also, available on GitHub: https://github.com/ZiliasTheSaint/RadQC.git Check out for dependent module!

    Downloads: 3 This Week Last Update: See Project
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    SpectrumGUI

    SpectrumGUI can generate filtered spectra for various x-ray tubes and can display attenuation coefficients for various materials. It also computes exposure and beam quality for various tube settings.

    Downloads: 3 This Week Last Update: See Project
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    Evil Dicom (classic) Icon

    Evil Dicom (classic)

    The original C# .NET 4.0 DICOM library designed for rapid development of DICOM applications. the new library can be found at evildicom.rexcardan.com. The website has maintenance planned for 08.21.12 and will be down.

    Downloads: 1 This Week Last Update: See Project
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    IQM Icon

    IQM

    Scientific Image and Signal Analysis in Java

    IQM has moved to GitHub https://github.com/iqmmug/iqm

    Downloads: 2 This Week Last Update: See Project
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    MIPPY

    Modular Image Processing in Python

    MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis.

    Downloads: 2 This Week Last Update: See Project
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